PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG011136t1
Common NameTCM_011136
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family Trihelix
Protein Properties Length: 339aa    MW: 38679.1 Da    PI: 7.5287
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG011136t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix63.64.3e-2041131286
          trihelix   2 WtkqevlaLiearremeerlrr......gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       Wt qe+l+Li+a+r ++er  +      +k  + +W++v ++++++g+ rs++qC++kw+nl ++ykk+++ +++ +s+ss ++p + ++e
  Thecc1EG011136t1  41 WTIQETLTLITAKRLDDERRTKpstsspSKPGELRWKWVENYCWDHGCFRSQNQCNDKWDNLLRDYKKVRHYQSQSQSQSSDHFPSYWSME 131
                       **************77666664333323468899*******************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.6E-432105IPR009057Homeodomain-like
PROSITE profilePS500907.24833103IPR017877Myb-like domain
PfamPF138373.7E-1440131No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MSNPPPPLPP TLHPQPPHIT AATTVTPSPT PTNREYRKGN WTIQETLTLI TAKRLDDERR  60
TKPSTSSPSK PGELRWKWVE NYCWDHGCFR SQNQCNDKWD NLLRDYKKVR HYQSQSQSQS  120
SDHFPSYWSM ERHQRKLHNL PTNMSPEVFE ALNDLLQRKY STQQQQQSTG SIQQQQQKQP  180
CISQLSEQVA AGTDQQAPEV EAPVTGSEES DSSETESSEN LGSETKRKKV RKIGSSIMQS  240
ASVLAQTLKS CEEKKEKRHQ EVMELEQRRL QIEETRNEVN RKGITDLVAA MTNLSGAIQS  300
LIANHYDQTP ALLFRQWTWI CDDVPLPKIE SCDRGIAV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007045355.10.0Transcription factor, putative
TrEMBLA0A061EA140.0A0A061EA14_THECC; Transcription factor, putative
STRINGGLYMA20G32540.21e-99(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34932662
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.15e-41Trihelix family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]